IL_9H9N_025

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9N_025 not in the Motif Atlas

Geometric match to IL_4LFB_020

Geometric discrepancy: 0.096

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

9H9N|1|A|C|504
9H9N|1|A|G|505
9H9N|1|A|G|506
9H9N|1|A|C|507
9H9N|1|A|U|508
9H9N|1|A|A|509
9H9N|1|A|A|510
9H9N|1|A|C|511
*
9H9N|1|A|G|540
9H9N|1|A|G|541

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS12