IL_9H9N_043

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9H9N_043 not in the Motif Atlas

Geometric match to IL_8P9A_453

Geometric discrepancy: 0.1313

The information below is about IL_8P9A_453

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9H9N|1|A|G|1401
9H9N|1|A|4OC|1402
9H9N|1|A|C|1403
9H9N|1|A|C|1404
*
9H9N|1|A|G|1497
9H9N|1|A|UR3|1498
9H9N|1|A|A|1499
9H9N|1|A|A|1500
9H9N|1|A|C|1501

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains