3D structure

PDB id
9HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.17 Å

Loop

Sequence
GGG*CC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA1_015 not in the Motif Atlas
Geometric match to IL_4LFB_041
Geometric discrepancy: 0.3083
The information below is about IL_4LFB_041
Detailed Annotation
Single stack bend
Broad Annotation
No text annotation
Motif group
IL_90729.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
30

Unit IDs

9HA1|1|A|G|628
9HA1|1|A|G|629
9HA1|1|A|G|630
*
9HA1|1|A|C|634
9HA1|1|A|C|635

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
Large ribosomal subunit protein uL15

Coloring options:


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