3D structure

PDB id
9HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.17 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
9HA1|1|A|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA1_024 not in the Motif Atlas
Homologous match to IL_5J7L_279
Geometric discrepancy: 0.2195
The information below is about IL_5J7L_279
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

9HA1|1|A|G|1011
9HA1|1|A|U|1012
9HA1|1|A|C|1013
*
9HA1|1|A|G|1149
9HA1|1|A|C|1150

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain J
Large ribosomal subunit protein uL13
Chain Q
Large ribosomal subunit protein bL20

Coloring options:


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