3D structure

PDB id
9HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.17 Å

Loop

Sequence
ACUAGG*CUGU
Length
10 nucleotides
Bulged bases
9HA1|1|A|U|1991, 9HA1|1|A|G|1992
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9HA1_048 not in the Motif Atlas
Homologous match to IL_4WF9_065
Geometric discrepancy: 0.4947
The information below is about IL_4WF9_065
Detailed Annotation
Intercalated tWH
Broad Annotation
Intercalated tWH
Motif group
IL_28217.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
10

Unit IDs

9HA1|1|A|A|1669
9HA1|1|A|C|1670
9HA1|1|A|U|1671
9HA1|1|A|A|1672
9HA1|1|A|G|1673
9HA1|1|A|G|1674
*
9HA1|1|A|C|1990
9HA1|1|A|U|1991
9HA1|1|A|G|1992
9HA1|1|A|U|1993

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain K
Large ribosomal subunit protein uL14

Coloring options:


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