IL_9HA1_049

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

9HA1|1|A|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA1_049 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1953

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9HA1|1|A|U|1712
9HA1|1|A|A|1713
9HA1|1|A|U|1714
9HA1|1|A|G|1715
9HA1|1|A|U|1716
9HA1|1|A|A|1717
9HA1|1|A|G|1718
*
9HA1|1|A|U|1742
9HA1|1|A|G|1743
9HA1|1|A|A|1744
9HA1|1|A|A|1745
9HA1|1|A|A|1746

Current chains

Chain A

23S ribosomal RNA

Nearby chains