IL_9HA2_010

3D structure

PDB id

9HA2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Alternative PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

9HA2|1|A|U|276, 9HA2|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA2_010 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.3303

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

9HA2|1|A|C|274
9HA2|1|A|C|275
9HA2|1|A|U|276
9HA2|1|A|G|277
9HA2|1|A|A|278
9HA2|1|A|A|279
9HA2|1|A|U|280
9HA2|1|A|C|281
*
9HA2|1|A|G|359
9HA2|1|A|U|360
9HA2|1|A|G|361
9HA2|1|A|A|362
9HA2|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains