IL_9HA3_018

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

9HA3|1|A|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA3_018 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.3794

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA3|1|A|U|702
9HA3|1|A|U|703
9HA3|1|A|G|704
9HA3|1|A|A|705
9HA3|1|A|A|706
9HA3|1|A|G|707
*
9HA3|1|A|U|724
9HA3|1|A|G|725
9HA3|1|A|G|726
9HA3|1|A|A|727
9HA3|1|A|G|728
9HA3|1|A|G|729
9HA3|1|A|A|730

Current chains

Chain A

23S ribosomal RNA

Nearby chains