IL_9HA5_018

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

9HA5|1|A|G|729

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA5_018 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2579

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA5|1|A|U|702
9HA5|1|A|U|703
9HA5|1|A|G|704
9HA5|1|A|A|705
9HA5|1|A|A|706
9HA5|1|A|G|707
*
9HA5|1|A|U|724
9HA5|1|A|G|725
9HA5|1|A|G|726
9HA5|1|A|A|727
9HA5|1|A|G|728
9HA5|1|A|G|729
9HA5|1|A|A|730

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2