IL_9HA7_028

3D structure

PDB id

9HA7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.37 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

9HA7|1|A|A|1127, 9HA7|1|A|U|1130, 9HA7|1|A|G|1131

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HA7_028 not in the Motif Atlas

Homologous match to IL_5J7L_281

Geometric discrepancy: 0.1598

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

9HA7|1|A|G|1024
9HA7|1|A|G|1025
9HA7|1|A|G|1026
9HA7|1|A|A|1027
9HA7|1|A|A|1028
9HA7|1|A|A|1029
9HA7|1|A|C|1030
*
9HA7|1|A|G|1124
9HA7|1|A|G|1125
9HA7|1|A|A|1126
9HA7|1|A|A|1127
9HA7|1|A|G|1128
9HA7|1|A|A|1129
9HA7|1|A|U|1130
9HA7|1|A|G|1131
9HA7|1|A|U|1132
9HA7|1|A|A|1133
9HA7|1|A|A|1134
9HA7|1|A|C|1135
9HA7|1|A|G|1136
9HA7|1|A|G|1137
9HA7|1|A|G|1138
9HA7|1|A|G|1139
9HA7|1|A|C|1140

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain J

Large ribosomal subunit protein uL13