IL_9HAI_051

3D structure

PDB id

9HAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_L2-L28 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAI_051 not in the Motif Atlas

Geometric match to IL_8C3A_484

Geometric discrepancy: 0.1845

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

9HAI|1|A|G|1666
9HAI|1|A|G|1667
9HAI|1|A|A|1668
9HAI|1|A|A|1669
9HAI|1|A|C|1670
9HAI|1|A|U|1671
9HAI|1|A|A|1672
9HAI|1|A|G|1673
9HAI|1|A|G|1674
*
9HAI|1|A|C|1990
9HAI|1|A|U|1991
9HAI|1|A|G|1992
9HAI|1|A|U|1993
9HAI|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain K

Large ribosomal subunit protein uL14