IL_9HAI_062

3D structure

PDB id

9HAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_L2-L28 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9HAI|1|A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HAI_062 not in the Motif Atlas

Homologous match to IL_9DFE_106

Geometric discrepancy: 0.3276

The information below is about IL_9DFE_106

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9HAI|1|A|G|2737
9HAI|1|A|A|2738
9HAI|1|A|U|2739
9HAI|1|A|A|2740
9HAI|1|A|A|2741
9HAI|1|A|G|2742
*
9HAI|1|A|C|2762
9HAI|1|A|G|2763
9HAI|1|A|A|2764
9HAI|1|A|A|2765
9HAI|1|A|A|2766
9HAI|1|A|C|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13