IL_9HFN_041
3D structure
- PDB id
- 9HFN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translation-initiation state of human mitochondrial ribosome small subunit (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CACCC*GACAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HFN_041 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.5908
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
9HFN|1|A|C|1491
9HFN|1|A|A|1492
9HFN|1|A|C|1493
9HFN|1|A|C|1494
9HFN|1|A|C|1495
*
9HFN|1|A|G|1554
9HFN|1|A|A|1555
9HFN|1|A|C|1556
9HFN|1|A|A|1557
9HFN|1|A|A|1558
9HFN|1|A|G|1559
Current chains
- Chain A
- 12S mitochondrial rRNA
Nearby chains
- Chain 3
- Aurora kinase A-interacting protein
- Chain 8
- Translation initiation factor IF-3, mitochondrial
- Chain J
- 28S ribosomal protein S12, mitochondrial
Coloring options: