IL_9HFO_001

3D structure

PDB id

9HFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HFO_001 not in the Motif Atlas

Geometric match to IL_5ED1_002

Geometric discrepancy: 0.1106

The information below is about IL_5ED1_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9HFO|1|5|A|4
9HFO|1|5|A|5
9HFO|1|5|G|6
*
9HFO|1|5|C|67
9HFO|1|5|G|68
9HFO|1|5|U|69

Current chains

Chain 5

fMet-tRNAMet

Nearby chains

Chain 7

Translation initiation factor IF-2, mitochondrial