IL_9HFO_044

3D structure

PDB id

9HFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HFO_044 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.0913

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25873.3

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

9HFO|1|A|G|1485
9HFO|1|A|C|1486
9HFO|1|A|C|1487
9HFO|1|A|C|1488
*
9HFO|1|A|G|1562
9HFO|1|A|U|1563
9HFO|1|A|A|1564
9HFO|1|A|A|1565
9HFO|1|A|C|1566

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 3

Aurora kinase A-interacting protein

Chain 5

fMet-tRNAMet

Chain 6

mRNA, start codon