IL_9HM4_001

3D structure

PDB id

9HM4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tRNA bound Ba1Cas12a3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HM4_001 not in the Motif Atlas

Geometric match to IL_4KTG_002

Geometric discrepancy: 0.2154

The information below is about IL_4KTG_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9HM4|1|B|U|59
9HM4|1|B|G|60
9HM4|1|B|G|61
*
9HM4|1|C|C|11
9HM4|1|C|C|12
9HM4|1|C|A|13

Current chains

Chain B

crRNA

Chain C

targetRNA

Nearby chains

Chain A

Ba1Cas12a3