IL_9HMW_004

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CCAAG*CCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|3|C|123
9HMW|1|3|C|124
9HMW|1|3|A|125
9HMW|1|3|A|126
9HMW|1|3|G|127
*
9HMW|1|3|C|136
9HMW|1|3|C|137
9HMW|1|3|G|138
9HMW|1|3|A|139
9HMW|1|3|G|140

Current chains

Chain 3

Ribosomal RNA 5.8S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain BN

Large ribosomal subunit protein uL23y