IL_9HMW_039

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

9HMW|1|A|OMG|917, 9HMW|1|A|A|929, 9HMW|1|A|A|930, 9HMW|1|A|U|931

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|G|916
9HMW|1|A|OMG|917
9HMW|1|A|G|918
*
9HMW|1|A|U|928
9HMW|1|A|A|929
9HMW|1|A|A|930
9HMW|1|A|U|931
9HMW|1|A|C|932

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AY

Large ribosomal subunit protein eL37z

Chain BM

Large ribosomal subunit protein uL22z

Chain BQ

Large ribosomal subunit protein uL2z

Chain Ea

Large ribosomal subunit protein eL15z