IL_9HMW_067

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CUAAG*CGAAAG

Length

11 nucleotides

Bulged bases

9HMW|1|A|A|1589, 9HMW|1|A|A|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|1541
9HMW|1|A|U|1542
9HMW|1|A|A|1543
9HMW|1|A|A|1544
9HMW|1|A|G|1545
*
9HMW|1|A|C|1586
9HMW|1|A|G|1587
9HMW|1|A|A|1588
9HMW|1|A|A|1589
9HMW|1|A|A|1590
9HMW|1|A|G|1591

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

Large ribosomal subunit protein eL37z

Chain BA

Large ribosomal subunit protein eL39z/eL39x

Chain BQ

Large ribosomal subunit protein uL2z

Chain Fa

Large ribosomal subunit protein eL34z