IL_9HMW_088

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CGUAAC*GGAAAAG

Length

13 nucleotides

Bulged bases

9HMW|1|A|A|1933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|1920
9HMW|1|A|G|1921
9HMW|1|A|U|1922
9HMW|1|A|A|1923
9HMW|1|A|A|1924
9HMW|1|A|C|1925
*
9HMW|1|A|G|1930
9HMW|1|A|G|1931
9HMW|1|A|A|1932
9HMW|1|A|A|1933
9HMW|1|A|A|1934
9HMW|1|A|A|1935
9HMW|1|A|G|1936

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain BC

Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v

Chain BE

Large ribosomal subunit protein eL43y

Chain h1

Small subunit ribosomal RNA; SSU rRNA