IL_9HMW_092

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CGAUGG*UGCUAACG

Length

14 nucleotides

Bulged bases

9HMW|1|A|U|2158, 9HMW|1|A|C|2173, 9HMW|1|A|C|2177

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|2155
9HMW|1|A|G|2156
9HMW|1|A|A|2157
9HMW|1|A|U|2158
9HMW|1|A|G|2159
9HMW|1|A|G|2160
*
9HMW|1|A|U|2171
9HMW|1|A|G|2172
9HMW|1|A|C|2173
9HMW|1|A|U|2174
9HMW|1|A|A|2175
9HMW|1|A|A|2176
9HMW|1|A|C|2177
9HMW|1|A|G|2178

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain BE

Large ribosomal subunit protein eL43y

Chain BQ

Large ribosomal subunit protein uL2z

Chain h1

Small subunit ribosomal RNA; SSU rRNA