IL_9HMW_107

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGUGUAGGAUAA*UAC

Length

15 nucleotides

Bulged bases

9HMW|1|A|U|2451, 9HMW|1|A|U|2453, 9HMW|1|A|G|2456, 9HMW|1|A|U|2458

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|G|2449
9HMW|1|A|G|2450
9HMW|1|A|U|2451
9HMW|1|A|G|2452
9HMW|1|A|U|2453
9HMW|1|A|A|2454
9HMW|1|A|G|2455
9HMW|1|A|G|2456
9HMW|1|A|A|2457
9HMW|1|A|U|2458
9HMW|1|A|A|2459
9HMW|1|A|A|2460
*
9HMW|1|A|U|2491
9HMW|1|A|A|2492
9HMW|1|A|C|2493

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AD

Small ribosomal subunit protein uS7y

Chain W2

Transfer RNA; tRNA