IL_9HMW_146

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CA*UUG

Length

5 nucleotides

Bulged bases

9HMW|1|C3|U|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HMW_146 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.2892

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

9HMW|1|C3|C|15
9HMW|1|C3|A|16
*
9HMW|1|C3|U|62
9HMW|1|C3|U|63
9HMW|1|C3|G|64

Current chains

Chain C3

Ribosomal RNA 5S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

Large ribosomal subunit protein uL16y

Chain BK

Large ribosomal subunit protein uL18z

Chain BU

Large ribosomal subunit protein uL5z