IL_9HMW_171

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

UAUCAA*UGGUAACG

Length

14 nucleotides

Bulged bases

9HMW|1|h1|U|315, 9HMW|1|h1|U|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|U|313
9HMW|1|h1|A|314
9HMW|1|h1|U|315
9HMW|1|h1|C|316
9HMW|1|h1|A|317
9HMW|1|h1|A|318
*
9HMW|1|h1|U|350
9HMW|1|h1|G|351
9HMW|1|h1|G|352
9HMW|1|h1|U|353
9HMW|1|h1|A|354
9HMW|1|h1|A|355
9HMW|1|h1|C|356
9HMW|1|h1|G|357

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain Aa

Small ribosomal subunit protein eS8z

Chain Va

Small ribosomal subunit protein uS12y

Chain Xa

Small ribosomal subunit protein uS17z