IL_9HMW_185

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GUGCCAG*CGG(OMU)AA(PSU)UC

Length

16 nucleotides

Bulged bases

9HMW|1|h1|A|581, 9HMW|1|h1|PSU|583, 9HMW|1|h1|U|584

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|G|564
9HMW|1|h1|U|565
9HMW|1|h1|G|566
9HMW|1|h1|C|567
9HMW|1|h1|C|568
9HMW|1|h1|A|569
9HMW|1|h1|G|570
*
9HMW|1|h1|C|577
9HMW|1|h1|G|578
9HMW|1|h1|G|579
9HMW|1|h1|OMU|580
9HMW|1|h1|A|581
9HMW|1|h1|A|582
9HMW|1|h1|PSU|583
9HMW|1|h1|U|584
9HMW|1|h1|C|585

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AA

Small ribosomal subunit protein uS3z

Chain B1

Messenger RNA (poly-U)

Chain Pa

Small ribosomal subunit protein eS30z/eS30y/eS30x

Chain Va

Small ribosomal subunit protein uS12y

Chain i2

Transfer RNA; tRNA