IL_9HMW_192

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GAAGAAA(PSU)(PSU)*(A2M)CAUU(A2M)GC

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|G|754
9HMW|1|h1|A|755
9HMW|1|h1|A|756
9HMW|1|h1|G|757
9HMW|1|h1|A|758
9HMW|1|h1|A|759
9HMW|1|h1|A|760
9HMW|1|h1|PSU|761
9HMW|1|h1|PSU|762
*
9HMW|1|h1|A2M|794
9HMW|1|h1|C|795
9HMW|1|h1|A|796
9HMW|1|h1|U|797
9HMW|1|h1|U|798
9HMW|1|h1|A2M|799
9HMW|1|h1|G|800
9HMW|1|h1|C|801

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AB

Small ribosomal subunit protein uS4y

Chain AE

Small ribosomal subunit protein uS8z/uS8w

Chain Ja

Small ribosomal subunit protein eS4x

Chain Xa

Small ribosomal subunit protein uS17z