IL_9HMW_207

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GGAGUA(PSU)G*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|G|1112
9HMW|1|h1|G|1113
9HMW|1|h1|A|1114
9HMW|1|h1|G|1115
9HMW|1|h1|U|1116
9HMW|1|h1|A|1117
9HMW|1|h1|PSU|1118
9HMW|1|h1|G|1119
*
9HMW|1|h1|U|1130
9HMW|1|h1|G|1131
9HMW|1|h1|A|1132
9HMW|1|h1|A|1133
9HMW|1|h1|A|1134
9HMW|1|h1|C|1135

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain BC

Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v

Chain Va

Small ribosomal subunit protein uS12y