IL_9HMW_214

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

GUAAGGA(OMU)UG*CUUGAUUC

Length

18 nucleotides

Bulged bases

9HMW|1|h1|G|1229

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|G|1225
9HMW|1|h1|U|1226
9HMW|1|h1|A|1227
9HMW|1|h1|A|1228
9HMW|1|h1|G|1229
9HMW|1|h1|G|1230
9HMW|1|h1|A|1231
9HMW|1|h1|OMU|1232
9HMW|1|h1|U|1233
9HMW|1|h1|G|1234
*
9HMW|1|h1|C|1253
9HMW|1|h1|U|1254
9HMW|1|h1|U|1255
9HMW|1|h1|G|1256
9HMW|1|h1|A|1257
9HMW|1|h1|U|1258
9HMW|1|h1|U|1259
9HMW|1|h1|C|1260

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain AI

Small ribosomal subunit protein eS10z

Chain Ca

Small ribosomal subunit protein uS14z/uS14y/uS14x