IL_9HMW_218
3D structure
- PDB id
- 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 9HMW|1|h1|C|1275, 9HMW|1|h1|U|1435, 9HMW|1|h1|G|1438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HMW|1|h1|U|1273
9HMW|1|h1|G|1274
9HMW|1|h1|C|1275
9HMW|1|h1|A|1276
9HMW|1|h1|U|1277
9HMW|1|h1|G|1278
9HMW|1|h1|G|1279
*
9HMW|1|h1|U|1433
9HMW|1|h1|C|1434
9HMW|1|h1|U|1435
9HMW|1|h1|G|1436
9HMW|1|h1|U|1437
9HMW|1|h1|G|1438
9HMW|1|h1|A|1439
9HMW|1|h1|U|1440
9HMW|1|h1|G|1441
Current chains
- Chain h1
- Ribosomal RNA 18S
Nearby chains
- Chain AA
- Small ribosomal subunit protein uS3z
- Chain AI
- Small ribosomal subunit protein eS10z
- Chain B1
- Messenger RNA (poly-U)
- Chain Ba
- Small ribosomal subunit protein uS10y
- Chain Ca
- Small ribosomal subunit protein uS14z/uS14y/uS14x
- Chain i2
- Transfer RNA; tRNA
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