IL_9HMW_232

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

G(OMC)CC*GUA(6MZ)C

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|G|1640
9HMW|1|h1|OMC|1641
9HMW|1|h1|C|1642
9HMW|1|h1|C|1643
*
9HMW|1|h1|G|1764
9HMW|1|h1|U|1765
9HMW|1|h1|A|1766
9HMW|1|h1|6MZ|1767
9HMW|1|h1|C|1768

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain B1

Messenger RNA (poly-U)

Chain BC

Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v

Chain Ua

Small ribosomal subunit protein uS11y

Chain W2

Transfer RNA; tRNA