IL_9HQV_002
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GUUUGA*UUAUGAUCC
- Length
- 15 nucleotides
- Bulged bases
- 9HQV|1|SD|U|6
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SC|G|10
9HQV|1|SC|U|11
9HQV|1|SC|U|12
9HQV|1|SC|U|13
9HQV|1|SC|G|14
9HQV|1|SC|A|15
*
9HQV|1|SD|U|3
9HQV|1|SD|U|4
9HQV|1|SD|A|5
9HQV|1|SD|U|6
9HQV|1|SD|G|7
9HQV|1|SD|A|8
9HQV|1|SD|U|9
9HQV|1|SD|C|10
9HQV|1|SD|C|11
Current chains
- Chain SC
- SSU-3
- Chain SD
- SSU-4
Nearby chains
- Chain Bb
- Putative 30S ribosomal protein S5
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain Bk
- Putative 30S ribosomal protein S15
- Chain Bm
- Putative ribosomal protein S17
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SB
- SSU-2
- Chain SF
- SSU-6
- Chain SJ
- SSU-10
- Chain SK
- SSU-11
- Chain Yc
- mS119
- Chain Yh
- mS124
- Chain Yu
- mS137
Coloring options: