IL_9HQV_004
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UGAUAGUACUACCGUAAGUACAUAAUAUACA*UAUAGAAG
- Length
- 39 nucleotides
- Bulged bases
- 9HQV|1|SF|G|13, 9HQV|1|SF|U|14, 9HQV|1|SF|U|17, 9HQV|1|SF|G|21, 9HQV|1|SF|U|22, 9HQV|1|SF|A|23, 9HQV|1|SF|G|25, 9HQV|1|SF|U|35, 9HQV|1|SF|A|64, 9HQV|1|SF|A|67
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SF|U|8
9HQV|1|SF|G|9
9HQV|1|SF|A|10
9HQV|1|SF|U|11
9HQV|1|SF|A|12
9HQV|1|SF|G|13
9HQV|1|SF|U|14
9HQV|1|SF|A|15
9HQV|1|SF|C|16
9HQV|1|SF|U|17
9HQV|1|SF|A|18
9HQV|1|SF|C|19
9HQV|1|SF|C|20
9HQV|1|SF|G|21
9HQV|1|SF|U|22
9HQV|1|SF|A|23
9HQV|1|SF|A|24
9HQV|1|SF|G|25
9HQV|1|SF|U|26
9HQV|1|SF|A|27
9HQV|1|SF|C|28
9HQV|1|SF|A|29
9HQV|1|SF|U|30
9HQV|1|SF|A|31
9HQV|1|SF|A|32
9HQV|1|SF|U|33
9HQV|1|SF|A|34
9HQV|1|SF|U|35
9HQV|1|SF|A|36
9HQV|1|SF|C|37
9HQV|1|SF|A|38
*
9HQV|1|SF|U|61
9HQV|1|SF|A|62
9HQV|1|SF|U|63
9HQV|1|SF|A|64
9HQV|1|SF|G|65
9HQV|1|SF|A|66
9HQV|1|SF|A|67
9HQV|1|SF|G|68
Current chains
- Chain SF
- SSU-6
Nearby chains
- Chain Bb
- Putative 30S ribosomal protein S5
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain By
- Homeodomain-like containing protein
- Chain Bz
- mS45
- Chain SA
- SSU-1
- Chain SD
- SSU-4
- Chain SE
- SSU-5
- Chain Uj
- Chain Uj
- Chain Ye
- mS121
- Chain Yf
- Macro domain-containing protein
- Chain Yo
- mS131
- Chain Yv
- mS138
Coloring options: