IL_9HQV_010
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UGU*AGG
- Length
- 6 nucleotides
- Bulged bases
- 9HQV|1|SG|G|10
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_010 not in the Motif Atlas
- Geometric match to IL_4M4O_004
- Geometric discrepancy: 0.301
- The information below is about IL_4M4O_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31737.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 12
Unit IDs
9HQV|1|SG|U|9
9HQV|1|SG|G|10
9HQV|1|SG|U|11
*
9HQV|1|SJ|A|7
9HQV|1|SJ|G|8
9HQV|1|SJ|G|9
Current chains
- Chain SG
- SSU-7
- Chain SJ
- SSU-10
Nearby chains
- Chain Bc
- Putative mitochondrial ribosomal protein s6-2
- Chain Bk
- Putative 30S ribosomal protein S15
- Chain Bn
- Putative ribosomal protein S18
- Chain SI
- SSU-9
- Chain Yg
- Thioredoxin domain-containing protein
- Chain Yj
- DnaJ domain-containing protein
- Chain Yr
- Acylphosphatase-like domain-containing protein
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