IL_9HQV_011
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GGU*AGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_011 not in the Motif Atlas
- Geometric match to IL_7MLW_006
- Geometric discrepancy: 0.3331
- The information below is about IL_7MLW_006
- Detailed Annotation
- Isolated tWW contact
- Broad Annotation
- Isolated tWW contact
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
9HQV|1|SG|G|20
9HQV|1|SG|G|21
9HQV|1|SG|U|22
*
9HQV|1|SI|A|32
9HQV|1|SI|G|33
9HQV|1|SI|C|34
Current chains
- Chain SG
- SSU-7
- Chain SI
- SSU-9
Nearby chains
- Chain Bc
- Putative mitochondrial ribosomal protein s6-2
- Chain Bg
- Putative ribosomal protein S11
- Chain Bn
- Putative ribosomal protein S18
- Chain Bo
- Ribosomal protein, bS21m
- Chain SJ
- SSU-10
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