IL_9HQV_013
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CC*GUG
- Length
- 5 nucleotides
- Bulged bases
- 9HQV|1|SJ|U|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_013 not in the Motif Atlas
- Geometric match to IL_8P9A_314
- Geometric discrepancy: 0.2453
- The information below is about IL_8P9A_314
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
9HQV|1|SJ|C|36
9HQV|1|SJ|C|37
*
9HQV|1|SJ|G|72
9HQV|1|SJ|U|73
9HQV|1|SJ|G|74
Current chains
- Chain SJ
- SSU-10
Nearby chains
- Chain Bk
- Putative 30S ribosomal protein S15
- Chain SG
- SSU-7
- Chain SU
- SSU-21
- Chain Yg
- Thioredoxin domain-containing protein
- Chain Yu
- mS137
Coloring options: