IL_9HQV_014
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CAAGGCAG*CUG
- Length
- 11 nucleotides
- Bulged bases
- 9HQV|1|SJ|C|42, 9HQV|1|SJ|U|71
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SJ|C|37
9HQV|1|SJ|A|38
9HQV|1|SJ|A|39
9HQV|1|SJ|G|40
9HQV|1|SJ|G|41
9HQV|1|SJ|C|42
9HQV|1|SJ|A|43
9HQV|1|SJ|G|44
*
9HQV|1|SJ|C|70
9HQV|1|SJ|U|71
9HQV|1|SJ|G|72
Current chains
- Chain SJ
- SSU-10
Nearby chains
- Chain Bg
- Putative ribosomal protein S11
- Chain Bk
- Putative 30S ribosomal protein S15
- Chain SG
- SSU-7
- Chain SI
- SSU-9
- Chain SU
- SSU-21
- Chain Ul
- GLY-ARG-SER-LYS-VAL-LEU-ILE-ARG-ARG-LEU-LYS-GLU-ARG-ALA-LYS-LYS-GLU-ALA-GLU-LYS-LYS-ALA
- Chain Yg
- Thioredoxin domain-containing protein
- Chain Yu
- mS137
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