IL_9HQV_016
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GGGGGUC*GUACAGUUGUAGGU
- Length
- 21 nucleotides
- Bulged bases
- 9HQV|1|SK|U|30, 9HQV|1|SK|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SK|G|11
9HQV|1|SK|G|12
9HQV|1|SK|G|13
9HQV|1|SK|G|14
9HQV|1|SK|G|15
9HQV|1|SK|U|16
9HQV|1|SK|C|23
*
9HQV|1|SK|G|29
9HQV|1|SK|U|30
9HQV|1|SK|A|31
9HQV|1|SK|C|32
9HQV|1|SK|A|33
9HQV|1|SK|G|34
9HQV|1|SK|U|35
9HQV|1|SK|U|36
9HQV|1|SK|G|37
9HQV|1|SK|U|38
9HQV|1|SK|A|39
9HQV|1|SK|G|40
9HQV|1|SK|G|41
9HQV|1|SK|U|42
Current chains
- Chain SK
- SSU-11
Nearby chains
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain Bk
- Putative 30S ribosomal protein S15
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SA
- SSU-1
- Chain SC
- SSU-3
- Chain SF
- SSU-6
- Chain SR
- SSU-18
- Chain SU
- SSU-21
- Chain Yh
- mS124
- Chain Yu
- mS137
Coloring options: