IL_9HQV_017
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GU*AAC
- Length
- 5 nucleotides
- Bulged bases
- 9HQV|1|SR|A|13
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_017 not in the Motif Atlas
- Geometric match to IL_5J7L_039
- Geometric discrepancy: 0.1017
- The information below is about IL_5J7L_039
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 132
Unit IDs
9HQV|1|SK|G|52
9HQV|1|SK|U|53
*
9HQV|1|SR|A|12
9HQV|1|SR|A|13
9HQV|1|SR|C|14
Current chains
- Chain SK
- SSU-11
- Chain SR
- SSU-18
Nearby chains
- Chain Bb
- Putative 30S ribosomal protein S5
- Chain Bv
- CHCH domain-containing protein
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SU
- SSU-21
- Chain Yr
- Acylphosphatase-like domain-containing protein
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