IL_9HQV_018

3D structure

PDB id

9HQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii

Experimental method

ELECTRON MICROSCOPY

Resolution

2.52 Å

Loop

Sequence

AGA*UU

Length

5 nucleotides

Bulged bases

9HQV|1|SK|G|56

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HQV_018 not in the Motif Atlas

Geometric match to IL_4LFB_036

Geometric discrepancy: 0.2131

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9HQV|1|SK|A|55
9HQV|1|SK|G|56
9HQV|1|SK|A|57
*
9HQV|1|SR|U|9
9HQV|1|SR|U|10

Current chains

Chain SK

SSU-11

Chain SR

SSU-18

Nearby chains

Chain Bv

CHCH domain-containing protein

Chain SU

SSU-21

Chain Yr

Acylphosphatase-like domain-containing protein