IL_9HQV_021
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GUA*UC
- Length
- 5 nucleotides
- Bulged bases
- 9HQV|1|SL|U|8
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_021 not in the Motif Atlas
- Geometric match to IL_8CRE_451
- Geometric discrepancy: 0.1766
- The information below is about IL_8CRE_451
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
9HQV|1|SL|G|7
9HQV|1|SL|U|8
9HQV|1|SL|A|9
*
9HQV|1|SM|U|23
9HQV|1|SM|C|24
Current chains
- Chain SL
- SSU-12
- Chain SM
- SSU-13
Nearby chains
- Chain Bj
- Putative ribosomal protein S14
- Chain Bu
- Small ribosomal subunit protein mS35 mitochondrial conserved domain-containing protein
- Chain SF
- SSU-6
- Chain SK
- SSU-11
- Chain Yo
- mS131
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