IL_9HQV_024
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UG*CUA
- Length
- 5 nucleotides
- Bulged bases
- 9HQV|1|SM|U|11
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_024 not in the Motif Atlas
- Geometric match to IL_4LFB_046
- Geometric discrepancy: 0.1906
- The information below is about IL_4LFB_046
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 129
Unit IDs
9HQV|1|SL|U|19
9HQV|1|SL|G|20
*
9HQV|1|SM|C|10
9HQV|1|SM|U|11
9HQV|1|SM|A|12
Current chains
- Chain SL
- SSU-12
- Chain SM
- SSU-13
Nearby chains
- Chain Bb
- Putative 30S ribosomal protein S5
- Chain Bf
- uS10m
- Chain Bj
- Putative ribosomal protein S14
- Chain SK
- SSU-11
- Chain SR
- SSU-18
- Chain Yn
- AP2 domain transcription factor AP2IX-6
- Chain Yq
- mS133
- Chain Yr
- Acylphosphatase-like domain-containing protein
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