IL_9HQV_025
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- AC*GUU
- Length
- 5 nucleotides
- Bulged bases
- 9HQV|1|SM|U|5
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_025 not in the Motif Atlas
- Geometric match to IL_3TZR_002
- Geometric discrepancy: 0.3336
- The information below is about IL_3TZR_002
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
9HQV|1|SL|A|24
9HQV|1|SL|C|25
*
9HQV|1|SM|G|4
9HQV|1|SM|U|5
9HQV|1|SM|U|6
Current chains
- Chain SL
- SSU-12
- Chain SM
- SSU-13
Nearby chains
- Chain BD
- mS92
- Chain Bb
- Putative 30S ribosomal protein S5
- Chain Bf
- uS10m
- Chain Bj
- Putative ribosomal protein S14
- Chain SR
- SSU-18
- Chain Yq
- mS133
- Chain Yr
- Acylphosphatase-like domain-containing protein
Coloring options: