IL_9HQV_027
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CGGUA*UGGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9HQV|1|SQ|G|10
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_027 not in the Motif Atlas
- Geometric match to IL_8P9A_295
- Geometric discrepancy: 0.2745
- The information below is about IL_8P9A_295
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_50730.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
9HQV|1|SP|C|18
9HQV|1|SP|G|19
9HQV|1|SP|G|20
9HQV|1|SP|U|21
9HQV|1|SP|A|22
*
9HQV|1|SQ|U|8
9HQV|1|SQ|G|9
9HQV|1|SQ|G|10
9HQV|1|SQ|A|11
9HQV|1|SQ|A|12
9HQV|1|SQ|G|13
Current chains
- Chain SP
- SSU-16
- Chain SQ
- SSU-17
Nearby chains
- Chain BB
- mS75
- Chain Bi
- us13m
- Chain SK
- SSU-11
- Chain SM
- SSU-13
- Chain SN
- SSU-14
- Chain Yn
- AP2 domain transcription factor AP2IX-6
- Chain Yp
- mS132
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