IL_9HQV_029
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GCG*CAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_029 not in the Motif Atlas
- Geometric match to IL_8CRE_130
- Geometric discrepancy: 0.1279
- The information below is about IL_8CRE_130
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9HQV|1|SQ|G|30
9HQV|1|SQ|C|31
9HQV|1|SQ|G|32
*
9HQV|1|SQ|C|48
9HQV|1|SQ|A|49
9HQV|1|SQ|C|50
Current chains
- Chain SQ
- SSU-17
Nearby chains
- Chain BB
- mS75
- Chain BD
- mS92
- Chain Be
- Putative ribosomal protein S9
- Chain Bf
- uS10m
- Chain Bj
- Putative ribosomal protein S14
- Chain SK
- SSU-11
- Chain SM
- SSU-13
- Chain SO
- SSU-15
- Chain SP
- SSU-16
- Chain Yn
- AP2 domain transcription factor AP2IX-6
- Chain Yq
- mS133
Coloring options: