IL_9HQV_033
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CAC*GAAG
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_033 not in the Motif Atlas
- Geometric match to IL_6DME_003
- Geometric discrepancy: 0.2854
- The information below is about IL_6DME_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75527.1
- Basepair signature
- cWW-cWW-cSH-cWW
- Number of instances in this motif group
- 10
Unit IDs
9HQV|1|SR|C|26
9HQV|1|SR|A|27
9HQV|1|SR|C|28
*
9HQV|1|SU|G|7
9HQV|1|SU|A|8
9HQV|1|SU|A|9
9HQV|1|SU|G|10
Current chains
- Chain SR
- SSU-18
- Chain SU
- SSU-21
Nearby chains
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain SK
- SSU-11
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