IL_9HQV_034
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- CAG*CG
- Length
- 5 nucleotides
- Bulged bases
- 9HQV|1|SS|A|6
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9HQV_034 not in the Motif Atlas
- Geometric match to IL_1I9X_001
- Geometric discrepancy: 0.2114
- The information below is about IL_1I9X_001
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 175
Unit IDs
9HQV|1|SS|C|5
9HQV|1|SS|A|6
9HQV|1|SS|G|7
*
9HQV|1|ST|C|16
9HQV|1|ST|G|17
Current chains
- Chain SS
- SSU-19
- Chain ST
- SSU-20
Nearby chains
- Chain Bq
- Mitochondrial ribosomal protein, mS26
- Chain Bt
- mS34
- Chain SB
- SSU-2
- Chain Ya
- mS117
- Chain Yh
- mS124
- Chain Yk
- RAP domain-containing protein
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