IL_9HUQ_011

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HUQ_011 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0972

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9HUQ|1|b|C|239
9HUQ|1|b|C|240
9HUQ|1|b|A|241
9HUQ|1|b|G|242
9HUQ|1|b|U|243
9HUQ|1|b|A|244
9HUQ|1|b|G|245
*
9HUQ|1|b|C|253
9HUQ|1|b|G|254
9HUQ|1|b|A|255
9HUQ|1|b|A|256
9HUQ|1|b|C|257
9HUQ|1|b|G|258

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain l

Large ribosomal subunit protein uL15