IL_9HUQ_055

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9HUQ|1|b|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HUQ_055 not in the Motif Atlas

Geometric match to IL_8B0X_118

Geometric discrepancy: 0.1324

The information below is about IL_8B0X_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9HUQ|1|b|U|1468
9HUQ|1|b|A|1469
9HUQ|1|b|A|1470
9HUQ|1|b|G|1471
*
9HUQ|1|b|U|1520
9HUQ|1|b|G|1521
9HUQ|1|b|A|1522
9HUQ|1|b|U|1523
9HUQ|1|b|G|1524

Current chains

Chain b

23S rRNA

Nearby chains