IL_9HUQ_089

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HUQ_089 not in the Motif Atlas

Homologous match to IL_7A0S_085

Geometric discrepancy: 0.2668

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9HUQ|1|b|U|2457
9HUQ|1|b|G|2458
9HUQ|1|b|A|2459
*
9HUQ|1|b|U|2493
9HUQ|1|b|G|2494

Current chains

Chain b

23S rRNA

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16