IL_9HY6_011

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9HY6_011 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.0972

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9HY6|1|b|C|239
9HY6|1|b|C|240
9HY6|1|b|A|241
9HY6|1|b|G|242
9HY6|1|b|U|243
9HY6|1|b|A|244
9HY6|1|b|G|245
*
9HY6|1|b|C|253
9HY6|1|b|G|254
9HY6|1|b|A|255
9HY6|1|b|A|256
9HY6|1|b|C|257
9HY6|1|b|G|258

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

Large ribosomal subunit protein bL35

Chain l

Large ribosomal subunit protein uL15